- Name of fastq with info from NGL databases
	- Uniformity with ng6 file names (new pipeline option)
	- Add files to readsets
	- Move MD5SUM process from CORE_PIPELINE to ILLUMINA_QC workflow

	ref: #91

	Ref: #88

	Ref: #85

	Ref: #81

	Ref: #75

	Ref: #78

	Ref: #75

	Ref: #76

	Ref: #74

	- Add joinPairs process

	Ref: #71

	Ref: #64

	Read and extract metrics from qualimap and fastp reports
	Create CSV file

	Ref : #69

	Ref: #60

	Ref: #62

	Ref: #66

	Ref : #62

	Ref: #53

	Ref: #56

	Ref : #56

	- Separation of these steps from others ine CORE pipeline
	- New param to skip this new subworkflow (for dev)

	Ref: #55

	Ref: #55

	Ref: #52

	Ref: #20

	- New sub-workflow for RNA QC against transcriptomic reference
	  and dependencies
	- Add salmon in multiqc

	Ref: #19

	- change glob pattern to discover files in subdirectories if
	  they exist

	Ref: #39

	Ref: #34

	- CamelCase -> snake_case
	- Add new params file template

	Ref: #29

	- Create utils functions
	- Create email templates
	- Send email at start
	- Send email at end
	- Correct manifest values
	- Create summary map

	Ref: #18

	Ref : # 21

	And remove one useless file
	Ref : #26

	reference : #16