FastQ namming using NGL api
- Name of fastq with info from NGL databases - Uniformity with ng6 file names (new pipeline option) - Add files to readsets - Move MD5SUM process from CORE_PIPELINE to ILLUMINA_QC workflow ref: #91
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- conf/base.config 7 additions, 0 deletionsconf/base.config
- modules/local/module_NGL-Bi.nf 25 additions, 0 deletionsmodules/local/module_NGL-Bi.nf
- nextflow.config 1 addition, 0 deletionsnextflow.config
- sub-workflows/local/begin_nglbi.nf 9 additions, 8 deletionssub-workflows/local/begin_nglbi.nf
- sub-workflows/local/core_pipeline.nf 10 additions, 6 deletionssub-workflows/local/core_pipeline.nf
- workflow/illumina_qc.nf 7 additions, 3 deletionsworkflow/illumina_qc.nf
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