Skip to content
Snippets Groups Projects
Commit e01bd8f7 authored by Jules Sabban's avatar Jules Sabban
Browse files

Increase memory for STAR

parent bb59ab90
No related branches found
No related tags found
1 merge request!21merge dev_jules
Hide whitespace changes
Inline Side-by-side
Showing
with 3 additions and 3 deletions
conf/base.config
+ 3
− 3
View file @ e01bd8f7
...@@ -145,11 +145,11 @@ process { ...@@ -145,11 +145,11 @@ process {
withName: SALMON_QUANT { withName: SALMON_QUANT {
module = toolsModuleHash['SALMON'] module = toolsModuleHash['SALMON']
time = { checkMax( 1.h * task.attempt, 'time' ) } time = { checkMax( 1.h * task.attempt, 'time' ) }
memory = { checkMax( 3.GB * task.attempt, 'memory' ) } memory = { checkMax( 10.GB * task.attempt, 'memory' ) }
cpus = 8 cpus = 8
publishDir = [ publishDir = [
path: "${params.outdir}/AlignmentStats", path: "${params.outdir}/alignmentStats",
mode: 'symlink', mode: 'symlink',
pattern: '*' pattern: '*'
] ]
...@@ -168,7 +168,7 @@ process { ...@@ -168,7 +168,7 @@ process {
time = { checkMax( 1.d * task.attempt, 'memory' ) } time = { checkMax( 1.d * task.attempt, 'memory' ) }
publishDir = [ publishDir = [
path: "${params.outdir}/AlignmentStats", path: "${params.outdir}/alignmentStats",
mode: 'copy', mode: 'copy',
pattern: '*.log' pattern: '*.log'
] ]
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment