Commits · dev · asm4pg / GenomAsm4pg

Feb 21, 2025
- Remove big tmp files · 237816c4
  PIAT LUCIEN authored 3 weeks ago
  
  237816c4
- fix the if statement · 90acaf18
  PIAT LUCIEN authored 3 weeks ago
  
  90acaf18
Feb 20, 2025
- Remove QUAST plots from rule all, only keep dir · 919b2032
  PIAT LUCIEN authored 3 weeks ago
  
  919b2032
- Update the report to run even if quast takes too long · aedb56f9
  PIAT LUCIEN authored 3 weeks ago
  
  aedb56f9
- Add more documentation about hi-c config · 9b794eff
  PIAT LUCIEN authored 3 weeks ago
  
  9b794eff
- Update script so that yash scafolding occurs · 455d7e10
  PIAT LUCIEN authored 3 weeks ago
  
  455d7e10
- clarify the readme · 17f814bb
  PIAT LUCIEN authored 3 weeks ago
  
  17f814bb
Feb 04, 2025
- Merge branch 'wf_restructuring' into 'dev' · 1fff924e
  PIAT LUCIEN authored 1 month ago
  
  Wf restructuring See merge request !15
  1fff924e
Feb 03, 2025
- Homogenize quast commant between pan1c and asm4pg · 19733e1c
  Lucien Piat authored 1 month ago
  
  19733e1c
- add benchmark for all tools · 5dde53ff
  Lucien Piat authored 1 month ago
  
  5dde53ff
Jan 17, 2025
- add input conversion script to readme · 3dfc393b
  Lucien Piat authored 1 month ago
  
  3dfc393b
- Remove typos in documentation · f79548ab
  Lucien Piat authored 1 month ago
  
  f79548ab
- Add more inforamtion in comments · 81d56ac8
  Lucien Piat authored 1 month ago
  
  81d56ac8
- Modifiy formating · c156f07c
  Lucien Piat authored 1 month ago
  
  c156f07c
- Add param list · 5710dc0d
  Lucien Piat authored 1 month ago
  
  5710dc0d
- update to hifiasm:0.24.0-r703 · 044f61ca
  Lucien Piat authored 1 month ago
  
  044f61ca
- remove old files · 2070a92d
  PIAT LUCIEN authored 1 month ago
  
  2070a92d
Jan 16, 2025
- use argument prasing · f09daaaa
  Lucien Piat authored 1 month ago
  
  f09daaaa
- change time to base min · 150c5c34
  Lucien Piat authored 1 month ago
  
  150c5c34
- increase runtime · 9dac0a15
  Lucien Piat authored 1 month ago
  
  9dac0a15
- add more time · 98583ac8
  Lucien Piat authored 1 month ago
  
  98583ac8
- fix busco error · 1916f3c7
  Lucien Piat authored 1 month ago
  
  1916f3c7
- add testing config · 9c1d37a6
  Lucien Piat authored 1 month ago
  
  9c1d37a6
- update hpc section · 1457b6fb
  Lucien Piat authored 1 month ago
  
  1457b6fb
- add verbose · df535c51
  Lucien Piat authored 1 month ago
  
  df535c51
- Include quast plots in report · 4361afae
  PIAT LUCIEN authored 1 month ago
  
  4361afae
- Remove commented unlock · a62819b1
  PIAT LUCIEN authored 1 month ago
  
  a62819b1
Jan 15, 2025
- Lint the std echos · 00293026
  PIAT LUCIEN authored 1 month ago
  
  00293026
- Ignore useless files · 46d6f120
  PIAT LUCIEN authored 1 month ago
  
  46d6f120
- Save the recap at the end · 125c72d5
  PIAT LUCIEN authored 1 month ago
  
  125c72d5
- Include the pwd to paths · 3a5a7fe3
  PIAT LUCIEN authored 1 month ago
  
  3a5a7fe3
- print to stderr instead of stdout · fba5824c
  PIAT LUCIEN authored 1 month ago
  
  fba5824c
- Add minimal configuration example · ae632b60
  PIAT LUCIEN authored 1 month ago
  
  ae632b60
- Add files to result dir · 197e60e6
  PIAT LUCIEN authored 1 month ago
  
  197e60e6
- update the report · e1dee80b
  PIAT LUCIEN authored 1 month ago
  
  e1dee80b
- Fix report generation · f455cf8e
  PIAT LUCIEN authored 1 month ago
  
  f455cf8e
Jan 14, 2025
- Fix Isolating QUAST output · 1a4aa0e3
  PIAT LUCIEN authored 1 month ago
  
  1a4aa0e3
- update the who why when · fea8ed2e
  PIAT LUCIEN authored 1 month ago
  
  fea8ed2e
- Update documentation with uniform style · caf56c17
  PIAT LUCIEN authored 1 month ago
  
  caf56c17
- fixed quast command · ccf58cc2
  PIAT LUCIEN authored 1 month ago
  
  ccf58cc2