From 7a02981b366b0250b83870a98f3d328bdeb1e975 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Noirot=20C=C3=A9line?= <celine.noirot@inra.fr>
Date: Mon, 10 Feb 2025 17:18:30 +0100
Subject: [PATCH] upgrade fastqc #242
---
conf/base.config | 1 +
env/metagWGS.yml | 1 -
2 files changed, 1 insertion(+), 1 deletion(-)
diff --git a/conf/base.config b/conf/base.config
index 061d014..0fbe2dd 100644
--- a/conf/base.config
+++ b/conf/base.config
@@ -25,6 +25,7 @@ process {
memory = { 8.GB * task.attempt }
}
withLabel: FASTQC {
+ container = 'quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0'
cpus = 8
memory = { 8.GB * task.attempt }
}
diff --git a/env/metagWGS.yml b/env/metagWGS.yml
index cb02fd8..dfdbc08 100644
--- a/env/metagWGS.yml
+++ b/env/metagWGS.yml
@@ -10,7 +10,6 @@ dependencies:
- cd-hit=4.8.1
- diamond=2.0.15
- eggnog-mapper=2.1.9
- - fastqc=0.11.9
- flye=2.9.1
- genometools-genometools=1.6.2
- hifiasm_meta=hamtv0.3
--
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